University of Heidelberg

Crystallization Facility

Structure Gallery

Here we present some of the protein structures recently elucidated using crystals grown at our protein crystallization platform:


Structure of fungal tRNA ligase Trl1 with RNA reveals conserved substrate-binding principles

Structure of fungal tRNA ligase Trl1 with RNA reveals conserved substrate-binding principles

Koehler et al. (2025)

Nat Struct Mol Biol

pdb entry: 8RBJ


Strand-Swapped SH3 Domain Dimer with Superoxide Dismutase Activity

Strand-Swapped SH3 Domain Dimer with Superoxide Dismutase Activity

Haege, Schwan et al. (2025)

ACS Cent Sci. 11 157-166

pdb entry: 9GGO


Structural and mechanistic insights into activation of human RNA ligase RTCB by Archease.

Structural and mechanistic insights into activation of human RNA ligase RTCB by Archease.

Gerber et al. (2024)

Nat Commun 15 2378

pdb entries: 8BTT, 8BTX, 8ODO, and 8ODP


Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome.

Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome.

Klein et al. (2024)

Nat Commun 15 716

pdb entry: 8ONX


Structural basis for binding of Drosophila Smaug to the GPCR Smoothened and to the germline inducer Oskar.

Structural basis for binding of Drosophila Smaug to the GPCR Smoothened and to the germline inducer Oskar.

Kubikova et al. (2023)

PNAS 120 e2304385120

pdb entries: 8OIJ and 8OIK


Mechanistic insights into RNA surveillance by the canonical poly(A) polymerase Pla1 of the MTREC complex.

Mechanistic insights into RNA surveillance by the canonical poly(A) polymerase Pla1 of the MTREC complex.

Soni et al. (2023)

Nat Commun. 14 772

pdb entries: 7Q72, 7Q73, and 7Q74


Structural and functional characterization of the N-terminal acetyltransferase Naa50.

Structural and functional characterization of the N-terminal acetyltransferase Naa50.

Weidenhausen et al. (2021)

Structure 29 413-425

pdb entries: 6YZZ and 6Z00


Structural basis of Naa20 activity towards a canonical NatB substrate.

Structural basis of Naa20 activity towards a canonical NatB substrate.

Layer et al. (2021)

Commun Biol 4 2

pdb entry: 6ZMP


Nanobody-Mediated Neutralization Reveals an Achilles Heel for Norovirus.

Nanobody-Mediated Neutralization Reveals an Achilles Heel for Norovirus.

Koromyslova et al. (2020)

J Virol. 94 e00660-20

pdb entries: 6XW4, 6XW5, 6XW6, and 6XW7


Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL.

Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL.

Sloan et al. (2020)

Nat Commun. 11 2223

pdb entries: 6RY3, 6RYD, 6RYI, and 6RYL


The Arabidopsis Nα-acetyltransferase NAA60 locates to the plasma membrane and is vital for the high salt stress response.

The Arabidopsis Nα-acetyltransferase NAA60 locates to the plasma membrane and is vital for the high salt stress response.

Linster, Layer et al. (2020)

New Phytol. 228 554-569

pdb entries: 6TGX and 6TH0


The ribosome-associated complex RAC serves in a relay that directs nascent chains to Ssb.

The ribosome-associated complex RAC serves in a relay that directs nascent chains to Ssb.

Zhang, Gese et al. (2020)

Nat Commun. 11 1504

pdb entry: 6SR6


Structural Basis of Nanobodies Targeting the Prototype Norovirus.

Structural Basis of Nanobodies Targeting the Prototype Norovirus.

Ruoff et al. (2019)

J Virol. 93 e02005-18

pdb entries: 6H6Y, 6H6Z, 6H70, 6H71, and 6H72


Structural analysis of a replication protein encoded by a plasmid isolated from a multiple sclerosis patient.

Structural analysis of a replication protein encoded by a plasmid isolated from a multiple sclerosis patient.

Kilic et al. (2019)

Acta Cryst. D75 498-507

pdb entry: 6H24


DENR–MCTS1 heterodimerization and tRNA recruitment are required for translation reinitiation.

DENR–MCTS1 heterodimerization and tRNA recruitment are required for translation reinitiation.

Ahmed et al. (2018)

PLOS Biol 16 e2005160

pdb entry: 5ONS


Atomic Structure of the Murine Norovirus Protruding Domain and Soluble CD300lf Receptor Complex.

Atomic Structure of the Murine Norovirus Protruding Domain and Soluble CD300lf Receptor Complex.

Kilic et al. (2018)

J Virol. 92 e00413-18

pdb entry: 5OR7


Molecular Mechanism of J-Domain-Triggered ATP Hydrolysis by Hsp70 Chaperones.

Molecular Mechanism of J-Domain-Triggered ATP Hydrolysis by Hsp70 Chaperones.

Kityk et al. (2018)

Mol Cell 69 227-237

pdb entry: 5NRO


Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.

Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.

Kater et al. (2017)

Cell 171 1599-1610

pdb entries: 6EMF and 6EMG


Structure of Naa15/Naa10 bound to HypK-THB.

Structure of Naa15/Naa10 bound to HypK-THB.

Weyer et al. (2017)

Nat Commun. 8 15726

pdb entries: 5NNP and 5NNR


9 angstrom structure of the COPI coat reveals that the Arf1 GTPase occupies two contrasting molecular environments.

9 angstrom structure of the COPI coat reveals that the Arf1 GTPase occupies two contrasting molecular environments.

Dodonova et al. (2017)

Elife 6 e26691

pdb entry: 5MU7


Lysine relay mechanism coordinates intermediate transfer in vitamin B6 biosynthesis.

Lysine relay mechanism coordinates intermediate transfer in vitamin B6 biosynthesis.

Rodrigues et al. (2017)

Nat Chem Biol. 13 290-294

pdb entries: 5LNS, 5LNT, 5LNU, 5LNV, 5LNW, and 5LNR


Structural insights into a unique Hsp70-Hsp40 interaction in the eukaryotic ribosome-associated complex.

Structural insights into a unique Hsp70-Hsp40 interaction in the eukaryotic ribosome-associated complex.

Weyer et al. (2017)

Nat Struct Mol Biol. 24 144-151

pdb entry: 5MB9


Interaction of the cotranslational Hsp70 Ssb with ribosomal proteins and rRNA depends on its lid domain.

Interaction of the cotranslational Hsp70 Ssb with ribosomal proteins and rRNA depends on its lid domain.

Gumiero et al. (2016)

Nat Commun. 7 13563

pdb entry: 5TKY


Structural analysis of bovine norovirus protruding domain.

Structural analysis of bovine norovirus protruding domain.

Singh et al. (2016)

Virology 487 296-301

pdb entry: 5E6T


Structural basis for cpSRP43 chromodomain selectivity and dynamics in Alb3 insertase interaction.

Structural basis for cpSRP43 chromodomain selectivity and dynamics in Alb3 insertase interaction.

Horn et al. (2015)

Nat Commun. 6 8875

pdb entries: 5E4W, 5E4X, and 2N88


Plasmodium falciparum antioxidant protein reveals a novel mechanism for balancing turnover and inactivation of peroxiredoxins.

Plasmodium falciparum antioxidant protein reveals a novel mechanism for balancing turnover and inactivation of peroxiredoxins.

Staudacher et al. (2015)

Free Radic Biol Med. 85 228-236

pdb entry: 4D73


Symportin 1 chaperones 5S RNP assembly during ribosome biogenesis by occupying an essential rRNA-binding site.

Symportin 1 chaperones 5S RNP assembly during ribosome biogenesis by occupying an essential rRNA-binding site.

Calvino et al. (2015)

Nat Commun. 6 6510

pdb entry: 5AFF


Structure of the complete bacterial SRP Alu domain.

Structure of the complete bacterial SRP Alu domain.

Kempf et al. (2014)

Nucleic Acids Res. 42 12284-12294

pdb entries: 4WFL and 4WFM


SRP RNA remodeling by SRP68 explains its role in protein translocation.

SRP RNA remodeling by SRP68 explains its role in protein translocation.

Grotwinkel et al. (2014)

Science 344 101-104

pdb entry: 4P3F


Structural characterization of a eukaryotic chaperone--the ribosome-associated complex.

Structural characterization of a eukaryotic chaperone--the ribosome-associated complex.

Leidig et al. (2013)

Nat. Struct. Mol. Biol. 20 23-28

pdb entries: 4GNI and 4GMQ


Structure and dynamics of the ATP-bound open conformation of Hsp70 chaperones.

Structure and dynamics of the ATP-bound open conformation of Hsp70 chaperones.

Kityk et al. (2012)

Mol. Cell 48 863-874

pdb entry: 4B9Q


Synchronizing nuclear import of ribosomal proteins with ribosome assembly.

Synchronizing nuclear import of ribosomal proteins with ribosome assembly.

Kressler et al. (2012)

Science 338 666-671

pdb entries: 4GMN and 4GMO


Structural basis for tail-anchored membrane protein biogenesis by the Get3-receptor complex.

Structural basis for tail-anchored membrane protein biogenesis by the Get3-receptor complex.

Stefer et al. (2011)

Science 333 758-762

pdb entries: 3SJA, 3SJB, 3SJC, and 3SJD